Transcript: lnc-EMX2-1:1

Basic information

LNCipedia transcript ID: lnc-EMX2-1:1 
LNCipedia gene ID: lnc-EMX2-1
Ensembl Gene ID: ENSG00000258114
Ensembl Transcript ID: ENST00000549104
Location (hg38): chr10:117425194-117490419
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 526 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549104.1; CTA-109P11.4-001; OTTHUMT00000406742.1; NONHSAT016520
Alternative gene names: ENSG00000258114.1; CTA-109P11.4; OTTHUMG00000169985.1; AC005871.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -328.7093 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EMX2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EMX2-1:1
4.0 lnc-EMX2-1:1
4.1 lnc-EMX2-1:1
5.0 lnc-EMX2-1:1
5.1 lnc-VTI1A-46:1
5.2 lnc-EMX2-1:1