Transcript: lnc-ENDOD1-1:8

Basic information

LNCipedia transcript ID: lnc-ENDOD1-1:8 
LNCipedia gene ID: lnc-ENDOD1-1
Ensembl Gene ID: ENSG00000245552
Ensembl Transcript ID: ENST00000540692
Location (hg38): chr11:95231733-95233346
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1201 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540692; ENST00000540692.1; RP11-712B9.2-005; OTTHUMT00000396521.1; NONHSAT023774
Alternative gene names: ENSG00000245552; RP11-712B9.2; ENSG00000245552.2; OTTHUMG00000167830.2; ENSG00000245552.6; AP000787.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.9881 non-coding 
CPAT coding probability 5.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ENDOD1-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ENDOD1-1:8
3.1 lnc-ENDOD1-1:8
4.0 lnc-ENDOD1-1:8
4.1 lnc-ENDOD1-1:8
5.0 lnc-ENDOD1-1:8
5.1 lnc-TRIM49C-53:9
5.2 lnc-ENDOD1-1:8