Transcript: lnc-EPB41L4B-1:1

Basic information

LNCipedia transcript ID: lnc-EPB41L4B-1:1 
LNCipedia gene ID: lnc-EPB41L4B-1
Location (hg38): chr9:109440062-109441252
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 570 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000435027.1; RP11-397F23.2-001; OTTHUMT00000053596.1; NONHSAT133947
Alternative gene names: ENSG00000230494.1; RP11-397F23.2; OTTHUMG00000020473.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -191.3162 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPB41L4B-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPB41L4B-1:1
4.0 lnc-EPB41L4B-1:1
4.1 lnc-EPB41L4B-1:1
5.0 lnc-EPB41L4B-1:1
5.1 lnc-SLC46A2-58:1
5.2 lnc-EPB41L4B-1:1