Transcript: lnc-EPCAM-2:3

Basic information

LNCipedia transcript ID: lnc-EPCAM-2:3 
LNCipedia gene ID: lnc-EPCAM-2
Location (hg38): chr2:47225793-47240384
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1839 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT070553; FPKM1_group_16015_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -85.8929 non-coding 
CPAT coding probability 3.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPCAM-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPCAM-2:3
4.0 lnc-EPCAM-2:3
4.1 lnc-EPCAM-2:3
5.0 lnc-EPCAM-2:3
5.1 lnc-TTC7A-7:1
5.2 lnc-EPCAM-2:3