Transcript: lnc-EPCAM-2:4

Basic information

LNCipedia transcript ID: lnc-EPCAM-2:4 
LNCipedia gene ID: lnc-EPCAM-2
Location (hg38): chr2:47226917-47239225
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 591 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226087.1|ENST00000426892.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -116.6172 non-coding 
CPAT coding probability 6.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPCAM-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-EPCAM-2:4
5.0 lnc-EPCAM-2:4
5.1 lnc-TTC7A-7:4
5.2 lnc-EPCAM-2:4