Transcript: lnc-EPCAM-3:9

Basic information

LNCipedia transcript ID: lnc-EPCAM-3:9 
LNCipedia gene ID: lnc-EPCAM-3
Ensembl Gene ID: ENSG00000235760
Ensembl Transcript ID: ENST00000439182
Location (hg38): chr2:47527771-47535199
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 362 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439182.2; AC138655.4-002; OTTHUMT00000323424.3; NONHSAT070587
Alternative gene names: ENSG00000235760.3; AC138655.4; OTTHUMG00000151664.5; HCG2040054; AC138655.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.5442 non-coding 
CPAT coding probability 10.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPCAM-3:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EPCAM-3:2
4.0 lnc-MSH2-3:5
4.1 lnc-MSH2-3:5
5.0 lnc-MSH2-3:5
5.1 lnc-TTC7A-10:5
5.2 lnc-EPCAM-3:9