Transcript: lnc-EPCAM-8:4

Basic information

LNCipedia transcript ID: lnc-EPCAM-8:4 
LNCipedia gene ID: lnc-EPCAM-8
RefSeq ID: NR_001568
Location (hg38): chr2:47335315-47335514
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 200 bp
Exons: 1
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_001568.1
Alternative gene names: BCYRN1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPCAM-8:4 no no no no

Available literature

  1. Chen (2015), Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity., Sci Rep
  2. Hu (2015), BCYRN1, a c-MYC-activated long non-coding RNA, regulates cell metastasis of non-small-cell lung cancer., Cancer Cell Int.
  3. Kraus (2015), Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma., J Cancer
  4. Liu (2015), Altered expression of long non-coding RNAs during genotoxic stress-induced cell death in human glioma cells., J. Neurooncol.
  5. Liu (2015), Carboplatin-docetaxel-induced activity against ovarian cancer is dependent on up-regulated lncRNA PVT1., Int J Clin Exp Pathol
  6. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  7. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  8. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  9. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  10. Wang (2015), Combined inhibition of EGFR and c-ABL suppresses the growth of triple-negative breast cancer growth through inhibition of HOTAIR., Oncotarget
  11. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  12. Perry (2014), Role of non-coding RNAs in maintaining primary airway smooth muscle cells., Respir. Res.
  13. Castle (2010), Digital genome-wide ncRNA expression, including SnoRNAs, across 11 human tissues using polyA-neutral amplification., PLoS ONE
  14. Lin (2008), Translational control by a small RNA: dendritic BC1 RNA targets the eukaryotic initiation factor 4A helicase mechanism., Mol. Cell. Biol.
  15. Khanam (2007), Two primate-specific small non-protein-coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners., Nucleic Acids Res.
  16. Mus (2007), Dendritic BC200 RNA in aging and in Alzheimer's disease., Proc. Natl. Acad. Sci. U.S.A.
  17. Kondrashov (2005), Inhibitory effect of naked neural BC1 RNA or BC200 RNA on eukaryotic in vitro translation systems is reversed by poly(A)-binding protein (PABP)., J. Mol. Biol.
  18. Muddashetty (2002), Poly(A)-binding protein is associated with neuronal BC1 and BC200 ribonucleoprotein particles., J. Mol. Biol.
  19. Kuryshev (2001), Birth of a gene: locus of neuronal BC200 snmRNA in three prosimians and human BC200 pseudogenes as archives of change in the Anthropoidea lineage., J. Mol. Biol.
  20. Kremerskothen (1998), Heterodimer SRP9/14 is an integral part of the neural BC200 RNP in primate brain., Neurosci. Lett.
  21. Skryabin (1998), The BC200 RNA gene and its neural expression are conserved in Anthropoidea (Primates)., J. Mol. Evol.
  22. Chen (1997), Expression of neural BC200 RNA in human tumours., J. Pathol.
  23. Martignetti (1993), BC200 RNA: a neural RNA polymerase III product encoded by a monomeric Alu element., Proc. Natl. Acad. Sci. U.S.A.
  24. Tiedge (1993), Primary structure, neural-specific expression, and dendritic location of human BC200 RNA., J. Neurosci.
  25. Watson (1987), Primate brain-specific cytoplasmic transcript of the Alu repeat family., Mol. Cell. Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-TTC7A-8:4
5.1 lnc-TTC7A-8:4
5.2 lnc-EPCAM-8:4