Transcript: lnc-EPN2-1:8

Basic information

LNCipedia transcript ID: lnc-EPN2-1:8 
LNCipedia gene ID: lnc-EPN2-1
Ensembl Gene ID: ENSG00000236022
Ensembl Transcript ID: ENST00000428348
Location (hg38): chr17:19203825-19214045
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428348.2; RP11-160E2.16-001; OTTHUMT00000441120.1; NONHSAT146444; ENST00000428348.6
Alternative gene names: ENSG00000236022.2; RP11-160E2.16; OTTHUMG00000178240.1; ENSG00000236022.6; AC106017.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.9484 non-coding 
CPAT coding probability 24.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EPN2-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC106017.1.1-1:1
4.0 lnc-AC106017.1.1-1:1
4.1 lnc-AC106017.1.1-1:1
5.0 lnc-AC106017.1.1-1:1
5.1 lnc-GLP2R-152:1
5.2 lnc-EPN2-1:8