Transcript: lnc-ERC1-1:1

Basic information

LNCipedia transcript ID: lnc-ERC1-1:1 
LNCipedia gene ID: lnc-ERC1-1
RefSeq ID: NR_028415
Location (hg38): chr12:1500491-1504424
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2244 bp
Exons: 2
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00020158; NONHSAT025396; NR_028415; NR_028415.1
Alternative gene names: XLOC_009615; linc-WNT5B; LINC00942


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.7227 non-coding 
CPAT coding probability 14.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERC1-1:1
3.1 lnc-ERC1-1:1
4.0 lnc-ERC1-1:1
4.1 lnc-ERC1-1:1
5.0 lnc-ERC1-1:1
5.1 lnc-CLEC4D-143:1
5.2 lnc-ERC1-1:1