Transcript: lnc-ERCC4-1:1

Basic information

LNCipedia transcript ID: lnc-ERCC4-1:1 
LNCipedia gene ID: lnc-ERCC4-1
Ensembl Gene ID: ENSG00000263234
Ensembl Transcript ID: ENST00000576600
Location (hg38): chr16:13953155-13954825
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576600.1; CTD-2135D7.3-001; OTTHUMT00000436615.1; NONHSAT140659
Alternative gene names: ENSG00000263234.1; CTD-2135D7.3; OTTHUMG00000177376.1; AC010401.3; AC010401.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.1421 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERCC4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERCC4-1:1
4.0 lnc-ERCC4-1:1
4.1 lnc-ERCC4-1:1
5.0 lnc-ERCC4-1:1
5.1 lnc-PDXDC1-17:1
5.2 lnc-ERCC4-1:1