Transcript: lnc-ERCC4-3:1

Basic information

LNCipedia transcript ID: lnc-ERCC4-3:1 
LNCipedia gene ID: lnc-ERCC4-3
Ensembl Gene ID: ENSG00000276564
Ensembl Transcript ID: ENST00000618736
Location (hg38): chr16:14150833-14153235
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2403 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT140670; ENST00000618736.1
Alternative gene names: ENSG00000276564.1; CTA-276F8.1; AC130650.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.9661 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERCC4-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERCC4-3:1
4.0 lnc-ERCC4-3:1
4.1 lnc-ERCC4-3:1
5.0 lnc-ERCC4-3:1
5.1 lnc-PDXDC1-14:1
5.2 lnc-ERCC4-3:1