Transcript: lnc-ERCC8-1:1

Basic information

LNCipedia transcript ID: lnc-ERCC8-1:1 
LNCipedia gene ID: lnc-ERCC8-1
Ensembl Gene ID: ENSG00000272308
Ensembl Transcript ID: ENST00000607723
Location (hg38): chr5:60866457-60866935
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 479 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607723.1
Alternative gene names: ENSG00000272308.1; RP11-231G3.1; AC104113.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -372.5091 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERCC8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERCC8-1:1
4.0 lnc-ERCC8-1:1
4.1 lnc-ERCC8-1:1
5.0 lnc-ERCC8-1:1
5.1 lnc-PLK2-10:1
5.2 lnc-ERCC8-1:1