Transcript: lnc-ERFE-4:1

Basic information

LNCipedia transcript ID: lnc-ERFE-4:1 
LNCipedia gene ID: lnc-ERFE-4
Ensembl Gene ID: ENSG00000225057
Ensembl Transcript ID: ENST00000438457
Location (hg38): chr2:238234456-238237206
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1448 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438457.1; AC096574.4-002; OTTHUMT00000328481.1; NONHSAT077710
Alternative gene names: ENSG00000225057.2; AC096574.4; OTTHUMG00000133338.5; AC012485.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.3805 non-coding 
CPAT coding probability 6.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERFE-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM132B-1:2
4.0 lnc-FAM132B-1:2
4.1 lnc-FAM132B-1:2
5.0 lnc-FAM132B-1:2
5.1 lnc-TRAF3IP1-5:5
5.2 lnc-ERFE-4:1