Transcript: lnc-ERG-9:2

Basic information

LNCipedia transcript ID: lnc-ERG-9:2 
LNCipedia gene ID: lnc-ERG-9
Location (hg38): chr21:38877291-38938429
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3825 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000544859; ENST00000544859.1; AF064858.6-201; NONHSAT082129
Alternative gene names: ENSG00000205622; AF064858.6; ENSG00000205622.4; OTTHUMG00000066036.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8161 non-coding 
CPAT coding probability 9.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERG-9:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMG1-8:2
3.1 lnc-PSMG1-9:3
4.0 lnc-ERG-9:2
4.1 lnc-ERG-9:2
5.0 lnc-ERG-9:2
5.1 lnc-CRYZL1-70:2
5.2 lnc-ERG-9:2