Transcript: lnc-ERG-9:3

Basic information

LNCipedia transcript ID: lnc-ERG-9:3 
LNCipedia gene ID: lnc-ERG-9
RefSeq ID: NR_120405
Location (hg38): chr21:38877291-38938429
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3823 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000380931; ENST00000380931.2; AF064858.6-001; OTTHUMT00000141410.2; NONHSAT082128; NR_120405; NR_120405.1
Alternative gene names: ENSG00000205622; AF064858.6; ENSG00000205622.4; OTTHUMG00000066036.3; ENSG00000205622.5; LOC400867


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8161 non-coding 
CPAT coding probability 9.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERG-9:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMG1-8:3
3.1 lnc-PSMG1-9:2
4.0 lnc-ERG-9:3
4.1 lnc-ERG-9:3
5.0 lnc-ERG-9:3
5.1 lnc-CRYZL1-70:3
5.2 lnc-ERG-9:3