Transcript: lnc-ERG-9:8

Basic information

LNCipedia transcript ID: lnc-ERG-9:8 
LNCipedia gene ID: lnc-ERG-9
Location (hg38): chr21:38913169-38915148
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 407 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000440379; ENST00000440379.1; AP001044.2-001; OTTHUMT00000194934.1; NONHSAT082134
Alternative gene names: ENSG00000234035; AP001044.2; ENSG00000234035.1; OTTHUMG00000086699.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.9963 non-coding 
CPAT coding probability 21.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERG-9:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERG-3:1
3.1 lnc-ERG-3:1
4.0 lnc-ERG-9:8
4.1 lnc-ERG-9:8
5.0 lnc-ERG-9:8
5.1 lnc-CRYZL1-70:8
5.2 lnc-ERG-9:8