Transcript: lnc-ERG28-1:2

Basic information

LNCipedia transcript ID: lnc-ERG28-1:2 
LNCipedia gene ID: lnc-ERG28-1
Location (hg38): chr14:75574904-75579588
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2143 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_110552
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 338.2954 coding 
CPAT coding probability 82.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ERG28-1:2 yes no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med
  2. Spurlock (2015), Expression and functions of long noncoding RNAs during human T helper cell differentiation., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C14orf1-1:2
4.0 lnc-C14orf1-1:2
4.1 lnc-C14orf1-1:2
5.0 lnc-C14orf1-1:2
5.1 lnc-PROX2-16:2
5.2 lnc-ERG28-1:2