Transcript: lnc-ERGIC1-1:2

Basic information

LNCipedia transcript ID: lnc-ERGIC1-1:2 
LNCipedia gene ID: lnc-ERGIC1-1
Location (hg38): chr5:172816609-172825558
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1539 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010174; NONHSAT105147
Alternative gene names: XLOC_004636; linc-ERGIC1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.8057 non-coding 
CPAT coding probability 12.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERGIC1-1:2 no no no no

Available literature

  1. Sendler (2013), Stability, delivery and functions of human sperm RNAs at fertilization., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERGIC1-1:2
3.1 lnc-ERGIC1-1:2
4.0 lnc-ERGIC1-1:2
4.1 lnc-ERGIC1-1:2
5.0 lnc-ERGIC1-1:2
5.1 lnc-ATP6V0E1-8:3
5.2 lnc-ERGIC1-1:2