Transcript: lnc-ERGIC1-1:3

Basic information

LNCipedia transcript ID: lnc-ERGIC1-1:3 
LNCipedia gene ID: lnc-ERGIC1-1
Ensembl Gene ID: ENSG00000253628
Ensembl Transcript ID: ENST00000518260
Location (hg38): chr5:172816621-172819958
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518260; ENST00000518260.1; RP11-536N17.1-001; OTTHUMT00000372515.1; NONHSAT147368
Alternative gene names: ENSG00000253628; RP11-536N17.1; ENSG00000253628.1; OTTHUMG00000163302.1; AC110011.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.8057 non-coding 
CPAT coding probability 4.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERGIC1-1:3 no no no no

Available literature

  1. Sendler (2013), Stability, delivery and functions of human sperm RNAs at fertilization., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERGIC1-1:3
3.1 lnc-ERGIC1-1:3
4.0 lnc-ERGIC1-1:3
4.1 lnc-ERGIC1-1:3
5.0 lnc-ERGIC1-1:3
5.1 lnc-ATP6V0E1-8:4
5.2 lnc-ERGIC1-1:3