Transcript: lnc-ERGIC1-1:4

Basic information

LNCipedia transcript ID: lnc-ERGIC1-1:4 
LNCipedia gene ID: lnc-ERGIC1-1
Location (hg38): chr5:172816598-172819958
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 606 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT105146; FPKM1_group_26775_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.8057 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERGIC1-1:4 no no no no

Available literature

  1. Sendler (2013), Stability, delivery and functions of human sperm RNAs at fertilization., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERGIC1-1:4
4.0 lnc-ERGIC1-1:4
4.1 lnc-ERGIC1-1:4
5.0 lnc-ERGIC1-1:4
5.1 lnc-ATP6V0E1-8:1
5.2 lnc-ERGIC1-1:4