Transcript: lnc-ERGIC2-12:2

Basic information

LNCipedia transcript ID: lnc-ERGIC2-12:2 
LNCipedia gene ID: lnc-ERGIC2-12
Location (hg38): chr12:28557859-28794950
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8322 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000011603.1|MICT00000075921.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.1085 non-coding 
CPAT coding probability 13.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERGIC2-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ERGIC2-12:2
5.0 lnc-ERGIC2-12:2
5.1 lnc-WBP11-114:1
5.2 lnc-ERGIC2-12:2