Transcript: lnc-ERGIC2-2:1

Basic information

LNCipedia transcript ID: lnc-ERGIC2-2:1 
LNCipedia gene ID: lnc-ERGIC2-2
Ensembl Gene ID: ENSG00000257176
Ensembl Transcript ID: ENST00000553105
Location (hg38): chr12:29280418-29317848
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2380 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553105.1; RP11-996F15.2-001; OTTHUMT00000403488.1
Alternative gene names: ENSG00000257176.1; RP11-996F15.2; OTTHUMG00000169321.1; ENSG00000257176.2; AC009318.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 238.8699 coding 
CPAT coding probability 8.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ERGIC2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERGIC2-2:1
4.0 lnc-ERGIC2-2:1
4.1 lnc-ERGIC2-2:1
5.0 lnc-ERGIC2-2:1
5.1 lnc-WBP11-121:1
5.2 lnc-ERGIC2-2:1