Transcript: lnc-ERGIC2-2:2

Basic information

LNCipedia transcript ID: lnc-ERGIC2-2:2 
LNCipedia gene ID: lnc-ERGIC2-2
Location (hg38): chr12:29280418-29309903
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2239 bp
Exons: 6
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000500230
Alternative gene names: ENSG00000245593


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 238.8699 coding 
CPAT coding probability 8.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ERGIC2-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ERGIC2-2:1
3.1 lnc-ERGIC2-2:2
4.0 lnc-ERGIC2-2:2
4.1 lnc-ERGIC2-2:2
5.0 lnc-ERGIC2-2:2
5.1 lnc-WBP11-121:4
5.2 lnc-ERGIC2-2:2