Transcript: lnc-ERI1-11:8

Basic information

LNCipedia transcript ID: lnc-ERI1-11:8 
LNCipedia gene ID: lnc-ERI1-11
Ensembl Gene ID: ENSG00000254235
Ensembl Transcript ID: ENST00000518619
Location (hg38): chr8:9326108-9367892
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 807 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518619; ENST00000518619.1; RP11-115J16.1-004; OTTHUMT00000375032.1; NONHSAT124944
Alternative gene names: ENSG00000254235; RP11-115J16.1; ENSG00000254235.1; OTTHUMG00000163665.2; ENSG00000254235.5; AC022784.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.1435 non-coding 
CPAT coding probability 20.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERI1-11:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-10A14.4.1-3:5
3.1 lnc-RP11-10A14.4.1-4:5
4.0 lnc-RP11-10A14.4.1-4:5
4.1 lnc-RP11-10A14.4.1-4:5
5.0 lnc-RP11-10A14.4.1-4:5
5.1 lnc-DEFB106A-36:8
5.2 lnc-ERI1-11:8