Transcript: lnc-ERICH2-1:15

Basic information

LNCipedia transcript ID: lnc-ERICH2-1:15 
LNCipedia gene ID: lnc-ERICH2-1
Location (hg38): chr2:170771136-170782393
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 291 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00003935
Alternative gene names: XLOC_001748; linc-GAD1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERICH2-1:15 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007405.7.1-1:6
3.1 lnc-AC007405.7.1-1:6
4.0 lnc-AC007405.7.1-1:6
4.1 lnc-AC007405.7.1-1:6
5.0 lnc-AC007405.7.1-1:6
5.1 lnc-UBR3-8:19
5.2 lnc-ERICH2-1:15