Transcript: lnc-ERICH2-1:5

Basic information

LNCipedia transcript ID: lnc-ERICH2-1:5 
LNCipedia gene ID: lnc-ERICH2-1
Location (hg38): chr2:170771012-170778620
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1442 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003932; NONHSAT075423
Alternative gene names: XLOC_001748; linc-GAD1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.1603 non-coding 
CPAT coding probability 2.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERICH2-1:5 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC007405.7.1-1:1
3.1 lnc-AC007405.7.1-1:1
4.0 lnc-AC007405.7.1-1:1
4.1 lnc-AC007405.7.1-1:1
5.0 lnc-AC007405.7.1-1:1
5.1 lnc-UBR3-8:8
5.2 lnc-ERICH2-1:5