Transcript: lnc-ERMARD-2:8

Basic information

LNCipedia transcript ID: lnc-ERMARD-2:8 
LNCipedia gene ID: lnc-ERMARD-2
Ensembl Gene ID: ENSG00000227704
Ensembl Transcript ID: ENST00000430250
Location (hg38): chr6:169725504-169738992
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 335 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011423; ENST00000430250.1; RP1-266L20.4-001; OTTHUMT00000043230.1; NONHSAT116224
Alternative gene names: XLOC_005555; linc-C6orf70; ENSG00000227704.1; RP1-266L20.4; OTTHUMG00000016063.1; AL354892.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.4684 non-coding 
CPAT coding probability 8.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERMARD-2:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf70-2:1
3.1 lnc-C6orf70-2:1
4.0 lnc-C6orf70-2:1
4.1 lnc-C6orf70-2:1
5.0 lnc-C6orf70-2:1
5.1 lnc-SYTL3-119:8
5.2 lnc-ERMARD-2:8