Transcript: lnc-ERP29-1:1

Basic information

LNCipedia transcript ID: lnc-ERP29-1:1 
LNCipedia gene ID: lnc-ERP29-1
Ensembl Gene ID: ENSG00000258323
Ensembl Transcript ID: ENST00000551125
Location (hg38): chr12:112063909-112065755
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 596 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551125.1; RP1-267L14.3-001; OTTHUMT00000405213.1; NONHSAT030790
Alternative gene names: ENSG00000258323.1; RP1-267L14.3; OTTHUMG00000169639.1; AC073575.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7046 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERP29-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERP29-1:1
4.0 lnc-ERP29-1:1
4.1 lnc-ERP29-1:1
5.0 lnc-ERP29-1:1
5.1 lnc-ERP29-1:1
5.2 lnc-ERP29-1:1