Transcript: lnc-ESCO1-2:1

Basic information

LNCipedia transcript ID: lnc-ESCO1-2:1 
LNCipedia gene ID: lnc-ESCO1-2
Ensembl Gene ID: ENSG00000265751
Ensembl Transcript ID: ENST00000584611
Location (hg38): chr18:21380286-21451017
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 679 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584611.1; RP11-296E23.1-001; OTTHUMT00000443790.1; NONHSAT058573
Alternative gene names: ENSG00000265751.1; RP11-296E23.1; OTTHUMG00000178893.1; AC015878.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.5697 non-coding 
CPAT coding probability 20.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESCO1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ESCO1-2:1
4.0 lnc-ESCO1-2:1
4.1 lnc-ESCO1-2:1
5.0 lnc-ESCO1-2:1
5.1 lnc-SMAD2-209:1
5.2 lnc-ESCO1-2:1