Transcript: lnc-ESRP2-2:9

Basic information

LNCipedia transcript ID: lnc-ESRP2-2:9 
LNCipedia gene ID: lnc-ESRP2-2
Ensembl Gene ID: ENSG00000262160
Ensembl Transcript ID: ENST00000571197
Location (hg38): chr16:68225969-68229145
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3177 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571197.1; RP11-96D1.11-001; OTTHUMT00000440184.1; NONHSAT143225
Alternative gene names: ENSG00000262160.1; RP11-96D1.11; OTTHUMG00000177997.1; AC020978.6; AC020978.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.5224 non-coding 
CPAT coding probability 4.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESRP2-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC7A6OS-2:1
4.0 lnc-SLC7A6OS-2:1
4.1 lnc-SLC7A6OS-2:1
5.0 lnc-SLC7A6OS-2:1
5.1 lnc-SLC12A4-5:1
5.2 lnc-ESRP2-2:9