Transcript: lnc-ESRP2-4:7

Basic information

LNCipedia transcript ID: lnc-ESRP2-4:7 
LNCipedia gene ID: lnc-ESRP2-4
Ensembl Gene ID: ENSG00000260441
Ensembl Transcript ID: ENST00000563175
Location (hg38): chr16:68256162-68260443
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 457 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563175.1; RP11-96D1.7-001; OTTHUMT00000433110.1; NONHSAT143234
Alternative gene names: ENSG00000260441.1; RP11-96D1.7; OTTHUMG00000176680.1; ENSG00000260441.5; AC020978.3; AC020978.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.9361 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESRP2-4:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ESRP2-2:1
4.0 lnc-ESRP2-2:1
4.1 lnc-ESRP2-2:1
5.0 lnc-ESRP2-2:1
5.1 lnc-SLC12A4-8:7
5.2 lnc-ESRP2-4:7