Transcript: lnc-ESRP2-4:8

Basic information

LNCipedia transcript ID: lnc-ESRP2-4:8 
LNCipedia gene ID: lnc-ESRP2-4
Ensembl Gene ID: ENSG00000260441
Ensembl Transcript ID: ENST00000569843
Location (hg38): chr16:68256162-68258867
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 288 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569843.1; RP11-96D1.7-002; OTTHUMT00000433109.1; NONHSAT143233; ENST00000569843.5
Alternative gene names: ENSG00000260441.1; RP11-96D1.7; OTTHUMG00000176680.1; ENSG00000260441.5; AC020978.3; AC020978.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 1.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ESRP2-4:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ESRP2-2:2
4.0 lnc-ESRP2-2:2
4.1 lnc-ESRP2-2:2
5.0 lnc-ESRP2-2:2
5.1 lnc-SLC12A4-8:8
5.2 lnc-ESRP2-4:8