Transcript: lnc-ETAA1-7:1

Basic information

LNCipedia transcript ID: lnc-ETAA1-7:1 
LNCipedia gene ID: lnc-ETAA1-7
Ensembl Gene ID: ENSG00000223859
Ensembl Transcript ID: ENST00000427579
Location (hg38): chr2:67040546-67041966
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427579; ENST00000427579.1; AC007403.3-001; OTTHUMT00000328269.1; NONHSAT071258
Alternative gene names: ENSG00000223859; AC007403.3; ENSG00000223859.1; OTTHUMG00000152857.1; AC007403.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -234.2986 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETAA1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETAA1-7:1
3.1 lnc-ETAA1-7:1
4.0 lnc-ETAA1-7:1
4.1 lnc-ETAA1-7:1
5.0 lnc-ETAA1-7:1
5.1 lnc-AFTPH-54:1
5.2 lnc-ETAA1-7:1