Transcript: lnc-ETDB-1:13

Basic information

LNCipedia transcript ID: lnc-ETDB-1:13 
LNCipedia gene ID: lnc-ETDB-1
Location (hg38): chrX:135118955-135119746
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 388 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00017093; ENST00000426364.1; RP11-85L21.3-002; OTTHUMT00000058399.1; NONHSAT138678; ENST00000426364.5
Alternative gene names: XLOC_008242; linc-FAM127B-2; ENSG00000224107.1; RP11-85L21.3; OTTHUMG00000022469.1; LINC00633; ENSG00000224107.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 34.7943 non-coding 
CPAT coding probability 31.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETDB-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXorf48-2:4
3.1 lnc-CXorf48-2:5
4.0 LINC00633:6
4.1 LINC00633:6
5.0 LINC00633:6
5.1 lnc-ETDB-1:7
5.2 lnc-ETDB-1:13