Transcript: lnc-ETDB-59:1

Basic information

LNCipedia transcript ID: lnc-ETDB-59:1 
LNCipedia gene ID: lnc-ETDB-59
Ensembl Gene ID: ENSG00000223809
Ensembl Transcript ID: ENST00000416873
Location (hg38): chrX:135123239-135123604
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 250 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416873; ENST00000416873.1; RP11-85L21.6-001; OTTHUMT00000058402.1; NONHSAT138682
Alternative gene names: ENSG00000223809; RP11-85L21.6; ENSG00000223809.1; OTTHUMG00000022472.1; AC234771.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.1076 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETDB-59:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CXorf48-1:1
3.1 lnc-CXorf48-1:1
4.0 lnc-CXorf48-1:1
4.1 lnc-CXorf48-1:1
5.0 lnc-CXorf48-1:1
5.1 lnc-ETDB-2:1
5.2 lnc-ETDB-59:1