Transcript: lnc-ETNK1-3:5

Basic information

LNCipedia transcript ID: lnc-ETNK1-3:5 
LNCipedia gene ID: lnc-ETNK1-3
Ensembl Gene ID: ENSG00000256995
Ensembl Transcript ID: ENST00000540994
Location (hg38): chr12:23021787-23054241
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 485 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540994; ENST00000540994.1; RP11-114G22.1-005; OTTHUMT00000401997.1; NONHSAT027297
Alternative gene names: ENSG00000256995; RP11-114G22.1; ENSG00000256995.1; OTTHUMG00000169009.3; ENSG00000256995.2; ENSG00000256995.6; AC084816.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.853 non-coding 
CPAT coding probability 6.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETNK1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETNK1-3:5
3.1 lnc-ETNK1-3:5
4.0 lnc-ETNK1-3:5
4.1 lnc-ETNK1-3:5
5.0 lnc-ETNK1-3:5
5.1 lnc-KIAA1551-103:21
5.2 lnc-ETNK1-3:5