Transcript: lnc-ETNK1-4:1

Basic information

LNCipedia transcript ID: lnc-ETNK1-4:1 
LNCipedia gene ID: lnc-ETNK1-4
Ensembl Gene ID: ENSG00000256321
Ensembl Transcript ID: ENST00000541288
Location (hg38): chr12:23099368-23188538
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 641 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541288; ENST00000541288.1; RP11-153K16.1-001; OTTHUMT00000401998.1; NONHSAT027299; ENST00000541288.5
Alternative gene names: ENSG00000256321; RP11-153K16.1; ENSG00000256321.1; OTTHUMG00000169025.2; ENSG00000256321.5; AC087258.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.6993 non-coding 
CPAT coding probability 6.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETNK1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETNK1-4:1
3.1 lnc-ETNK1-4:1
4.0 lnc-ETNK1-4:1
4.1 lnc-ETNK1-4:1
5.0 lnc-ETNK1-4:1
5.1 lnc-KIAA1551-100:1
5.2 lnc-ETNK1-4:1