Transcript: lnc-ETS1-1:5

Basic information

LNCipedia transcript ID: lnc-ETS1-1:5 
LNCipedia gene ID: lnc-ETS1-1
Ensembl Gene ID: ENSG00000245008
Ensembl Transcript ID: ENST00000501648
RefSeq ID: NR_135072
Location (hg38): chr11:128681240-128686922
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1916 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501648.2; NR_135072.1
Alternative gene names: ENSG00000245008.3; RP11-744N12.3; AP001122.1; LOC101929538; ENSG00000245008.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.2679 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ETS1-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-744N12.3.1-2:1
4.0 lnc-RP11-744N12.3.1-2:1
4.1 lnc-RP11-744N12.3.1-2:1
5.0 lnc-RP11-744N12.3.1-2:1
5.1 lnc-ADAMTS8-28:1
5.2 lnc-ETS1-1:5