Transcript: lnc-EVX1-14:3

Basic information

LNCipedia transcript ID: lnc-EVX1-14:3 
LNCipedia gene ID: lnc-EVX1-14
Ensembl Gene ID: ENSG00000224322
Ensembl Transcript ID: ENST00000412413
Location (hg38): chr7:27361843-27409938
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012984; ENST00000412413; ENST00000412413.1; AC004009.3-001; OTTHUMT00000257963.1; NONHSAT119732
Alternative gene names: XLOC_006028; linc-TAX1BP1; ENSG00000224322; AC004009.3; ENSG00000224322.1; OTTHUMG00000133703.1; AC004009.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.7726 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EVX1-14:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EVX1-12:2
3.1 lnc-EVX1-14:3
4.0 lnc-EVX1-14:3
4.1 lnc-EVX1-14:3
5.0 lnc-EVX1-14:3
5.1 lnc-SNX10-33:8
5.2 lnc-EVX1-14:3