Transcript: lnc-EXOC3-1:2

Basic information

LNCipedia transcript ID: lnc-EXOC3-1:2 
LNCipedia gene ID: lnc-EXOC3-1
Location (hg38): chr5:478123-479489
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1367 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000431004.1; CTD-2228K2.7-201; NONHSAT147314
Alternative gene names: ENSG00000225138.2; CTD-2228K2.7; OTTHUMG00000167373.2; ENSG00000225138.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.9111 non-coding 
CPAT coding probability 70.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EXOC3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXOC3-1:2
4.0 lnc-EXOC3-1:2
4.1 lnc-EXOC3-1:2
5.0 lnc-EXOC3-1:2
5.1 lnc-CARD6-413:1
5.2 lnc-EXOC3-1:2