Transcript: lnc-EXOC4-2:5

Basic information

LNCipedia transcript ID: lnc-EXOC4-2:5 
LNCipedia gene ID: lnc-EXOC4-2
Ensembl Gene ID: ENSG00000225881
Ensembl Transcript ID: ENST00000436379
RefSeq ID: NR_134332
Location (hg38): chr7:132758970-132760632
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 751 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00013080; ENST00000436379.1; AC009365.4-001; OTTHUMT00000338728.1; NONHSAT123435; NR_134332.1
Alternative gene names: XLOC_006255; linc-EXOC4-3; ENSG00000225881.1; AC009365.4; OTTHUMG00000155197.1; AC009365.1; LOC100506937; AC009365.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.4311 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOC4-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC009365.3.1-2:1
3.1 lnc-AC009365.3.1-2:1
4.0 lnc-AC009365.3.1-2:1
4.1 lnc-AC009365.3.1-2:1
5.0 lnc-AC009365.3.1-2:1
5.1 lnc-BPGM-17:2
5.2 lnc-EXOC4-2:5