Transcript: lnc-EXOSC6-2:1

Basic information

LNCipedia transcript ID: lnc-EXOSC6-2:1 
LNCipedia gene ID: lnc-EXOSC6-2
Ensembl Gene ID: ENSG00000247228
Ensembl Transcript ID: ENST00000502126
Location (hg38): chr16:70158957-70173448
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2242 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000502126; ENST00000502126.1; RP11-296I10.3-001; OTTHUMT00000434586.2; NONHSAT143401
Alternative gene names: ENSG00000247228; AC009060.1; ENSG00000247228.2; RP11-296I10.3; OTTHUMG00000176981.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.7707 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOSC6-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EXOSC6-2:1
3.1 lnc-EXOSC6-2:1
4.0 lnc-EXOSC6-2:1
4.1 lnc-EXOSC6-2:1
5.0 lnc-EXOSC6-2:1
5.1 lnc-NOB1-12:1
5.2 lnc-EXOSC6-2:1