Transcript: lnc-EXOSC6-3:27

Basic information

LNCipedia transcript ID: lnc-EXOSC6-3:27 
LNCipedia gene ID: lnc-EXOSC6-3
Ensembl Gene ID: ENSG00000196696
Ensembl Transcript ID: ENST00000561788
Location (hg38): chr16:70017890-70019410
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1521 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561788.1; PDXDC2P-007; OTTHUMT00000434501.1; NONHSAT143381
Alternative gene names: ENSG00000196696.7; PDXDC2P; OTTHUMG00000167593.2; ENSG00000196696.8; ENSG00000196696.12; PDXDC2P-NPIPB14P; AC009022.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.6706 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-EXOSC6-3:27 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EXOSC6-3:5
4.0 lnc-RP11-419C5.2.1-3:8
4.1 lnc-RP11-419C5.2.1-3:8
5.0 lnc-RP11-419C5.2.1-3:8
5.1 lnc-NOB1-5:16
5.2 lnc-EXOSC6-3:27