Transcript: lnc-EYA2-3:1

Basic information

LNCipedia transcript ID: lnc-EYA2-3:1 
LNCipedia gene ID: lnc-EYA2-3
Ensembl Gene ID: ENSG00000267882
Ensembl Transcript ID: ENST00000599904
RefSeq ID: NR_024594
Location (hg38): chr20:47318502-47320754
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2253 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024594; ENST00000599904.2; NR_024594.1
Alternative gene names: ENSG00000267882.2; RP4-569M23.5; AL031666.2; LOC100131496


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.8213 non-coding 
CPAT coding probability 56.24% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-EYA2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EYA2-3:1
4.0 lnc-EYA2-3:1
4.1 lnc-EYA2-3:1
5.0 lnc-EYA2-3:1
5.1 lnc-STK4-72:1
5.2 lnc-EYA2-3:1