Transcript: lnc-F13A1-2:1

Basic information

LNCipedia transcript ID: lnc-F13A1-2:1 
LNCipedia gene ID: lnc-F13A1-2
Ensembl Gene ID: ENSG00000261211
Ensembl Transcript ID: ENST00000563225
Location (hg38): chr6:6680309-6683633
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3325 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563225.1; RP1-80N2.3-001; OTTHUMT00000431245.1; NONHSAT107554
Alternative gene names: ENSG00000261211.1; RP1-80N2.3; OTTHUMG00000175893.1; AL031123.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.2451 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F13A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-F13A1-2:1
4.0 lnc-F13A1-2:1
4.1 lnc-F13A1-2:1
5.0 lnc-F13A1-2:1
5.1 lnc-ECI2-157:9
5.2 lnc-F13A1-2:1