Transcript: lnc-F13A1-3:15

Basic information

LNCipedia transcript ID: lnc-F13A1-3:15 
LNCipedia gene ID: lnc-F13A1-3
Location (hg38): chr6:6758278-6759291
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011443; ENST00000435429; ENST00000435429.1; RP3-470L22.1-001; OTTHUMT00000039765.1; NONHSAT107573
Alternative gene names: XLOC_005596; linc-F13A1-2; ENSG00000224532; RP3-470L22.1; ENSG00000224532.1; OTTHUMG00000014193.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.6543 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F13A1-3:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-F13A1-2:1
3.1 lnc-F13A1-4:1
4.0 lnc-F13A1-3:15
4.1 lnc-F13A1-3:15
5.0 lnc-F13A1-3:15
5.1 lnc-ECI2-161:6
5.2 lnc-F13A1-3:15