Transcript: lnc-F13A1-3:5

Basic information

LNCipedia transcript ID: lnc-F13A1-3:5 
LNCipedia gene ID: lnc-F13A1-3
Location (hg38): chr6:6700695-6711858
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 525 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00012649
Alternative gene names: XLOC_005595; linc-F13A1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.5605 non-coding 
CPAT coding probability 30.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F13A1-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-F13A1-1:5
3.1 lnc-F13A1-3:5
4.0 lnc-F13A1-3:5
4.1 lnc-F13A1-3:5
5.0 lnc-F13A1-3:5
5.1 lnc-ECI2-161:16
5.2 lnc-F13A1-3:5