Transcript: lnc-F3-7:1

Basic information

LNCipedia transcript ID: lnc-F3-7:1 
LNCipedia gene ID: lnc-F3-7
RefSeq ID: NR_104131
Location (hg38): chr1:94657533-94820281
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1331 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000452922.1; RP11-86H7.1-001; OTTHUMT00000029548.1; NONHSAT004605; NR_104131; NR_104131.1
Alternative gene names: ENSG00000224081.2; RP11-86H7.1; OTTHUMG00000010701.1; ENSG00000224081.3; LINC01057;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8735 non-coding 
CPAT coding probability 4.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:1 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNN3-3:1
4.0 LINC01057:1
4.1 LINC01057:1
5.0 LINC01057:1
5.1 lnc-CNN3-5:1
5.2 lnc-F3-7:1