Transcript: lnc-F3-7:20

Basic information

LNCipedia transcript ID: lnc-F3-7:20 
LNCipedia gene ID: lnc-F3-7
Location (hg38): chr1:94672897-94732345
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 646 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000432162.1; RP11-86H7.1-007; OTTHUMT00000029554.1
Alternative gene names: ENSG00000224081.2; RP11-86H7.1; OTTHUMG00000010701.1; ENSG00000224081.3; LINC01057;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2351 non-coding 
CPAT coding probability 9.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:20 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNN3-3:7
4.0 LINC01057:11
4.1 LINC01057:11
5.0 LINC01057:11
5.1 lnc-CNN3-5:20
5.2 lnc-F3-7:20