Transcript: lnc-F3-7:27

Basic information

LNCipedia transcript ID: lnc-F3-7:27 
LNCipedia gene ID: lnc-F3-7
Location (hg38): chr1:94616397-94620987
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1032 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001590; NONHSAT004598
Alternative gene names: XLOC_000922; linc-F3-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.419 non-coding 
CPAT coding probability 2.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-F3-7:27 no no no no

Available literature

  1. Kumar (2013), Human disease-associated genetic variation impacts large intergenic non-coding RNA expression., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-F3-2:3
3.1 lnc-F3-2:3
4.0 LINC01057:19
4.1 LINC01057:19
5.0 LINC01057:19
5.1 lnc-CNN3-5:27
5.2 lnc-F3-7:27